PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001001.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 163aa    MW: 17828.1 Da    PI: 10.1552
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001001.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.22.7e-2668155128
                      NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + e yfF++r+ k+   +r +rat sgyWkatgkdk++ ++   + +vg+kktLvfykg+ ++g+ktdW+mhey+l
  Itr_sc001001.1_g00001.1   6 DGERYFFIRREVKNGGRNRCSRATLSGYWKATGKDKKIGVSgeAQGVVGIKKTLVFYKGKPSNGSKTDWMMHEYSL 81 
                              5589**********************************998545556***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.478199IPR003441NAC domain
SuperFamilySSF1019411.83E-31599IPR003441NAC domain
PfamPF023657.1E-14981IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MFGDSDGERY FFIRREVKNG GRNRCSRATL SGYWKATGKD KKIGVSGEAQ GVVGIKKTLV  60
FYKGKPSNGS KTDWMMHEYS LGGAPQPQAN WVLCRIFLKK KGGERSPSAS LVPAFRDFFA  120
AERADLNLAP ASSLSSRSSS VTESCNYQTG DHQEATSCSR AVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-20110567171NAC domain-containing protein 19
4dul_A2e-20110567171NAC domain-containing protein 19
1ut7_B2e-20110567171NO APICAL MERISTEM PROTEIN
1ut7_A2e-20110567171NO APICAL MERISTEM PROTEIN
1ut4_B2e-20110567171NO APICAL MERISTEM PROTEIN
1ut4_A2e-20110567171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.11e-51PREDICTED: NAC transcription factor 25
SwissprotQ9FY932e-36NAC83_ARATH; NAC domain-containing protein 83
TrEMBLS5XG862e-46S5XG86_CAMSI; NAC transcription factor
STRINGPOPTR_0001s13380.11e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-36NAC domain containing protein 83